Scaffold Ga0210400

Basic Information
Taxon OID	3300021170 Open in IMG/M
Scaffold ID	Ga0210400_10001123 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	27195
Total Scaffold Genes	29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (86.21%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

27195

Total Scaffold Genes

29 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (86.21%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005419	Metagenome / Metatranscriptome	401	Y
F011165	Metagenome / Metatranscriptome	294	Y
F026317	Metagenome / Metatranscriptome	198	Y
F034101	Metagenome / Metatranscriptome	175	Y
F070346	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210400_1000112310	F005419	AGGAGG	MAAAGATEAVGQGKGPEAVTSLRGTRKMRAGQTNGVEVQRFFLAKTGGSNGVPEFSKEVPGEPEAMVESLKTGLSYFVLSEWQGVADFSGKKPQLGREAVRGAPKTG
Ga0210400_1000112315	F070346	GGAG	MKPLFAMISPRWQRLLEFATWGALIAVICASAPFLFDLVGRGIGWIIGLSPRPEELWKECPWCL
Ga0210400_1000112327	F011165	GAG	MQVPWHRFHKAYEEYIRWQAFVLWARAIVELEGSAPSWLETILRKRCPGFMEEASRLSKPELLGLQVLPWVHNQVFGFAKQEGWLDALVFYGFRDTRSQGYWTYWEHCESEWRKRRPASFPTLVRWRRSALSWKLRGDVSCAAVVKAVEKYLDFEALVYWLRPLFRGAKVLLPPHVALELRQESPSFLEFLRRETSGAYEDKSRSWQRLFDWGKVHVLSHAKKEGWLDCVLRQAGIHPRHVRLVDYSALWCKSRRVNTALPYPHLREWQRDMEGYVRAGRK
Ga0210400_100011236	F026317	AGCAGG	MAFFAQLLELVAVFLPDPLTLGLFTLALFNLLCIAKTLHVAGTLDTDAALRISLAIGYLITIAINILSSGQAPARPAITAVVQSKSNVHQAGRESSPSTVGSQPVGHRDAVIES
Ga0210400_100011237	F034101	N/A	MPVSVSPREIHDWIEESLGQRPNIGLRKAIVNMLFVAPNPFDPRARRNPKTGFLVGTILFAASLGCFCYFNFAR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210400_10001123

Overview

Ecosystem & Geography

Associated Families

Sequences