Scaffold Ga0210400_10000377

Overview

Basic Information

• Taxon OID: 3300021170
• Scaffold ID: Ga0210400_10000377
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 50747
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (73.08%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000512	Metagenome / Metatranscriptome	1064	Y
F000739	Metagenome / Metatranscriptome	913	Y
F006229	Metagenome / Metatranscriptome	378	Y
F007488	Metagenome / Metatranscriptome	350	Y
F009917	Metagenome	311	Y
F084509	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210400_1000037737	F009917	AGGA	MGTSGWTYVVVVFSLGAQLVVFLRWMHRRMRDDEIQRVFVRDLALRHLPNIYRALNTIAEQQGIHLEEQPMVNYVDLRNGGRHR
Ga0210400_1000037739	F007488	AGG	MKIRAYEESDLEALKAIHARQGFSYAFPDLGNPLFLTKLVLGREEGGKGIAGGALLRLTAEAYLLLDPAAGSPREKWQWLLGLHEATRRDALARGLEDVHAWLPPEIAAKFGKRLTRLGWVRDDVWTPYCRKLR
Ga0210400_1000037742	F084509	GGAGG	MPSYGNLVPPVSVGFGDSAAVIASTDVVFPAPFKSAQVALAPAFSSGKVRAAVEIVWSGAPGVISVQLQTADTDIDAAYIQEGAAITNVNSGNVTRAEFPDVVAKFARILIATLPNNVTATAKISA
Ga0210400_1000037744	F006229	GAGG	MNKQSDVVSLVNISTQKWPPRNRTYFGSLVIQSPEGGAAYAVTPVRACTSVMDLGDKRSMEIRLSAQEIAEDLVREINGDSGEGSYHGVFVAAGPEPTDEELSEARKKLKAFQLRLVETADLEWERSHNMMFITDLERRAARELGLEKPWLYDPKPMADCPACGEKIKPGVAVCRTCGAILDREKAAKFGLAEREEKGGEAANVPEKKGTREK
Ga0210400_1000037748	F000739	AGGA	MRASRVEVWLKGLVAAGISGGAGGVMTGLAAVGIDPGHFNLQAGMGATARIGAAAALINAVIGVAAYLQKSPLPGE
Ga0210400_1000037749	F000512	N/A	MIEVIRETHVTPESVARRLCLAGGTNRYGEANYRVVWGWNRLGWIGGKFEDRDARGDLIREVVELRWEPKYPQVNRWHVERWMPAEAYGSPRSWYAQTIERADGKSVAALGPYPDRGEYEHCFTLQGPRGEFVQLTATIAEHVARAIEWGRGRDQASQRAKLYEREAREERAYEEWAFEVMDDGAPAFGGAPMVAAG