Scaffold Ga0210400

Basic Information
Taxon OID	3300021170 Open in IMG/M
Scaffold ID	Ga0210400_10000279 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	60047
Total Scaffold Genes	46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	36 (78.26%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

60047

Total Scaffold Genes

46 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

36 (78.26%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000923	Metagenome / Metatranscriptome	833	Y
F005666	Metagenome / Metatranscriptome	393	Y
F066176	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210400_1000027933	F005666	GGAG	MKIPSFRILLPMAALLCASGPHLAHAQAPLEPAQMSPRTLFYLIWRGVPGPEARKENALLALWDDAEFAPVRSAMAAGMLHSSGEKAEQPKLTSAQVQEFAGLLENSFTIGYLSEPAKRRAAPAEGAADSKASAWNGLFFVYDRRGKEELLSKAILGLRASAKDVPRLSSVTIGGVQALKTESKDGVSYWAEDGKYAVGASEPAVMEEILGRLDGKISGGASLAQSAPYQEAQKNLGGGLLEFFLRVPDLEQFASDSKPGSFQMLPLLDAARLDAVHSLSGRVIFEGAKTHVQGAIVGDAVPGTPFDIWGGGQPGPASLAFVPAEANSYTWMQLNLQGIYDTVKRVARAAFPQAQQGNADLMDTLAQQKLGMPVAEALGLFSGEFASMQTSPSMDNAKQVYFFGMRKKPETLKLLRAVFSEQLASERNEGDVTFLKISLGGKQSNAGDAQWNFFNLAVTPDMILGASKIETLHEVLANRAHASTAAGLASVPQFQARRGQFPEDLNGLSYFDFQKVDWQALKDRLIVEAKKSSVAKTVGPSKDGVPSATPDWLAQMNLQVVARHLHCSSSVSWKDAKGIHWDQWIE
Ga0210400_1000027945	F066176	AGAAG	LIGGALAALLASPVRLMAEENDGRPNNPFILLLKGLYQPVPVGDGPANNLGLSAVNLSDGSYSRTLIYPVFGIPESRDQDKFIGKFYVQMTGNLCAYDLPDGAIAMQFASSPVLQDIGFNTFVPFPDGKGGFFLEGTFELMILEATGIYRAFQGGHNHMVDRLHQLDAAGTKFDEFCFCNISQYEFP
Ga0210400_100002795	F000923	GGA	MKTKDNGRKWMWMFLAALVALQTYFVWELLAVFALFAAGFAAVAFVVGSLYMLHRGWAVAVERIADSRHPIMVATRQGIDTLEDAVRRPFRRPGSAPAR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210400_10000279

Overview

Ecosystem & Geography

Associated Families

Sequences