Scaffold Ga0210400_10000172

Overview

Basic Information

• Taxon OID: 3300021170
• Scaffold ID: Ga0210400_10000172
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 82006
• Total Scaffold Genes: 81
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (65.43%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000512	Metagenome / Metatranscriptome	1064	Y
F000703	Metagenome / Metatranscriptome	928	Y
F000781	Metagenome / Metatranscriptome	895	Y
F001959	Metagenome / Metatranscriptome	611	Y
F002853	Metagenome / Metatranscriptome	526	Y
F073888	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210400_1000017216	F000781	N/A	MLTVAQLAPLKDRDPYLYETLVKIVSSVNATSQRAGVDPSTPAPAPSPIASVSVQASNGWFDISIADPSAARPGLFYFAESDTTPAFSAPRVYFMGASRNLYVQLGNQTLYWRAYSQYIGSLPSAPVSFGAPPAAVAGGGATGPAPLPSSGSGVFPNGVPRGGNGFGVHPGSRITRQTIL
Ga0210400_1000017217	F000703	AGG	MQIREYQESDLAALRAIHAAQGFDYALPDLRNPLFVTKLVLAQDAASSVVGAQHAAPLQQPTLGEDEPRECILRGAEEPVSDRIIGAALLRLTAEAYLLLDPKAGTPRERWQWLLALHAAAERDAWQRGLEDVHAWLPPLIAGKFGKRIARLGWLRDDTWTPYCKKLSEGK
Ga0210400_1000017218	F002853	AGGAGG	MGRGAQSQTRQLTDQERANIDALNQQFLGQQQQVGNLLLPQFQSILNNPGLSPADKAAVTGQSQGALASAFDSLQQSAQNRLARTRNSAGFSELTDELARQKGIAEAGQAQQNQLAFTNTAFQRQMAALQGLSGLFGIDSNLLGRTLGIPAELLNVRANASRSNGGGFFSALGSGLGSTLGALPGAFF
Ga0210400_1000017221	F073888	GGA	MLTKYWIHPAELTIVILLALAIYFSWRADQRDRAQLASELAAAKQLLAAADARQHDRDNQLAQTLATLATEKRTIVTPAQIIRDLPAQLPLPSPIVLQSAPALPNSPTPKANAVIPAEDLKPLYDFTIDCKSCQAKLATAQSDLADERQKTTALTRERDDALRIARGGNVWRRITRAAKWFLIGAAAGAVAAKAAR
Ga0210400_100001723	F000512	N/A	MILVVRETHDTPETAAHRLERAGGINRYGEANYRAMWGWNRLAWIGGKFEDRDEHGELLRERVELRWEPKYPAVNRWHIERWLPPETYGSPRAWYAQTSERENGISIPALGPYPSRGEYEHCFTLESSRGEFVQLTATAAEHIARAIEWSRTFPHAKHRAGLYGREAHEDRSYEDWAFDQLDDAVPAFHKQPFVTVA
Ga0210400_1000017235	F001959	GGAGG	MKNLDSVFAAYMVGWTVFFVYYISVARRTAALRDEIERLKNSLNRGK