NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210400_10000153

Scaffold Ga0210400_10000153


Overview

Basic Information
Taxon OID3300021170 Open in IMG/M
Scaffold IDGa0210400_10000153 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)93110
Total Scaffold Genes86 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)72 (83.72%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001597Metagenome / Metatranscriptome666Y
F001792Metagenome / Metatranscriptome633Y
F005810Metagenome / Metatranscriptome389Y
F017458Metagenome / Metatranscriptome240Y

Sequences

Protein IDFamilyRBSSequence
Ga0210400_1000015311F005810N/AMSENDYLKQVAALTGLQHYPQQGPWGRKSGTVIGARDGYVTAIGFVRSREAKIVILVRFKKVENPEVVKLAVNQSTAVPKKRGKLAEVGNDFLRWEWKYSFTKPKAEDVAQLADALRESIKPVAQGFDGRCERCTSSSTQALTLLNGVPIFICAGCQEKVHHELDQAAINYEAIVPNYPNGLALGIGAAVLGGVAWGLVAYAINRIFLYGAILIGYFVAGGVLKGTGKVTRFGQVIIPIFTVASVLFGDAIFYTLAIMKHESAPFSTKLLGAVLSHLWEIEKEGNGVLTIIFALVGAGYALYAARKPKFKAAFQPLGVPSA
Ga0210400_1000015366F001597GGAMIDETTKQAAQEYLATKLTEEEQIYEATQNQALAVARAPLVWKHVKDSIFTKCSEWNAVTQEQTLTCKETAIGDLRIWCAARSKQMTVHYDSKKLLITVKNAGRLEHEKDVILHMEGYRTGPERTDRDVHLVRNEQAVNIDLLIVGELRVLTGMERQRKA
Ga0210400_1000015378F017458AGGAGMGKPGQKILRARERILEILESENGCSAWFRERDANPAATFRTLSYELDRKGEEFVRESDGTGEMKLFRSPYVARVIQADGSYATITINMRGAFFSGTASVVKEQGNGGPWRVDGARGLRVGPYAGESLYAQILALLHEFGHVVDLLPADGGEQEAKSVENTNEVLRFCRAEIESKVRRNTLSAAR
Ga0210400_1000015379F001792N/AMPQRKLFRFLLLAVLGLIAGFLALAIAVPIEPQVPAPLIALFSPGLKLAELLTPATGKSFAWTFGWFLRIAILTNAAFYYALFAVAVHLVDRRRSN

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