Scaffold Ga0210400_10000086

Overview

Basic Information

• Taxon OID: 3300021170
• Scaffold ID: Ga0210400_10000086
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 126751
• Total Scaffold Genes: 122
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 92 (75.41%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000188	Metagenome / Metatranscriptome	1692	Y
F000536	Metagenome / Metatranscriptome	1044	Y
F001619	Metagenome / Metatranscriptome	662	Y
F021509	Metagenome / Metatranscriptome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210400_10000086102	F000536	N/A	MLELSPQQMQVMERLFASGFRPIAIPPYENALCMRKGGCAAVLAPVPNGGLRLLAPPSYLVEGNLSVKLKRGPGEVFVWKERQVEATPEKLKELESFRVEITEIMDMPPKQ
Ga0210400_10000086108	F000188	GGAGG	MGVKPELAFDVCWEVYRSAREVLETKRGISALNWKDTGKFLWRPDFRARINEWVADFALAGQTALEGPDWASRMVLFRLYYLGLAPYENARHFLGLSEHSWVTWTEEIRRRCGKELLGRRMFPPRKYFTNGI
Ga0210400_10000086114	F021509	AGGAG	MSAVPVPGPSFLEKLTNAIHLDHVLKIAGVGGFVWAFLASWHTLGFGVKAGMLASVAAWLVGSRFSKIYR
Ga0210400_10000086118	F001619	GGA	MRDFFQRLFQGRYVGLLESEVCRLRAENRALMNSLLGTAGFPPVEFPEAPKPQPLPRLRKRSWHQLQAWRQTESNRDASATFDERTSERTNGPVPHI