Scaffold Ga0210400_10000072

Overview

Basic Information

• Taxon OID: 3300021170
• Scaffold ID: Ga0210400_10000072
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 139543
• Total Scaffold Genes: 130
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 95 (73.08%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001909	Metagenome / Metatranscriptome	619	Y
F001986	Metagenome / Metatranscriptome	608	Y
F024185	Metagenome / Metatranscriptome	207	Y
F046237	Metagenome / Metatranscriptome	151	Y
F051723	Metagenome / Metatranscriptome	143	Y
F075738	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210400_10000072110	F075738	GAG	MDGEGTEKTRTLKTAGCGTQFSRNEDMRGREDKIVVGRKEIARAGGITAALGEALSLAALRMTPRAITAYEAVGSAPAEEDGCAMVVQIVVRDEEELREAMGAGAEAVLLEGVSVEEARRLGEIARELRGDCLVEEEKI
Ga0210400_10000072124	F024185	AGG	MQTVYYSLMKKLLAVVAVVLLGILLGQAAVGQQEKPLKTSILDAHEGVTIGVEPWTTASRYKEKFSKKTPFAAGIVALRLSIRNDNDEAVKLNRPRIRLLVQLDSENKQELEAMTADDVADTVMLKQNGKDPTARRSPIPLPLPIGGGPKPERDKNWMDFQAACQNAGLPSSVIGAHSTMEGLVYFDLRGELDLLQTARLYVPDLEKMTSKQTILYFDIDFSRTN
Ga0210400_1000007214	F001909	N/A	MPRLGTEERRRKGRLKLPRTVRVRPSEPGPADFDEILPTQNAALDSVYFVSKNKRYKEGLRVFITFPYSDSPGSINQESLGKVVRIDELDHGRRGIAVQILMPLYLGAKETVR
Ga0210400_1000007228	F001986	N/A	VCCERVMRYNMLVHQGGAAYGVLLCSVCSKNVTFELEHQADLSLYGDGARALSMLGSPKPPDVPRKKLDGDAALNDQTL
Ga0210400_1000007267	F051723	GGAGG	MALSAKQILFSSALLLSASPLFANETAAKSGVAPVPRAFVNCPGISNVPMTADAEQALPMRQIAILACGQQVTVLADNEGYTARIRTSDGKEGYVARMYLTTATPPPAQPALEFDTPAPVTNATPINGIVRWNVGLPGCDQFNSRGRMVESATAEGITVQVALQDTGWKLHASVAVSNGGDSKVSVVPTLITLDELVPTLRNLREENPAKLAHSQANHQLMRSESTAVPPPSAIVLHQRSVARAPEAGYHSTSVDDYLGFNFESASVRDVALKAANLAPGQKTSGELWFARDSRAFELSLRVSVGNVVFDFPFSFDQR
Ga0210400_100000727	F046237	GGAGG	MDTKFFRLLLLSAAMTLVLPLAFADSPFPKTANCPIDGATGHATGKTRKGVESACTEVEYKHKGTDYSDPRHPQKFNHLFWIAHCTE