Scaffold Ga0210400

Basic Information
Taxon OID	3300021170 Open in IMG/M
Scaffold ID	Ga0210400_10000050 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	196437
Total Scaffold Genes	163 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	124 (76.07%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

196437

Total Scaffold Genes

163 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

124 (76.07%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001032	Metagenome / Metatranscriptome	800	Y
F002695	Metagenome / Metatranscriptome	536	Y
F006482	Metagenome / Metatranscriptome	372	Y
F038383	Metagenome	166	Y
F061219	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210400_10000050110	F001032	AGGA	MLGKRKCQMGSCGSAAVTTLDHQAFCLNHFLLRCYAELEGLDPQGRQSSSETVDLVSMRAFIEECSRKALDISLQSKNLTNLQRGRLLDILLWAGELFVFCRAPRLTVAQSMAFSEGGPAARAAAPNF
Ga0210400_10000050121	F002695	GAG	MVSIFILVFAAFALVKFGISQWRAIWLTTANQPLSDSLQLTAGIDGAHVGAGDFSTLLHLCHELSPDLKKKSPWLREVSVYYRAVEKLENAFRVKLPAISAWAKGEMQICSRYVAVVLDQSLSMSMDRQFATRTN
Ga0210400_100000502	F061219	N/A	MGKGKLILGLAVLALAVIAGWQIVSCELANLELRGDLRDIASQAGAYIGLVSFNSDEDFRKAVIRAAQSHDIQLEPEQVTVQRTGTALNQSIYLAVDYKARVKVPGFSLAFHFHPTSAR
Ga0210400_1000005044	F006482	N/A	MVVLLYAPLAGAAWSTHQMACCTSGQCPIPAHHHQKAPAAPADHMDCGHEMAGMTACSISCCHDTERSLVASMAFVLPPPAVAADATSIKSPIELAKPLDFPRSIEPLSPPPRYFSVAA
Ga0210400_100000506	F038383	GAGG	MPLSARNPITNTYPVEASGWGSDQSFFVEKCELEWNEETGKYLTLTRSLSPGSMIFLRLLLPTSPDRSLPVPYRAQPAGFTPEGQQQFRLEQVQPNGGSKDKSK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210400_10000050

Overview

Ecosystem & Geography

Associated Families

Sequences