Scaffold Ga0210400_10000048

Overview

Basic Information

• Taxon OID: 3300021170
• Scaffold ID: Ga0210400_10000048
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 198072
• Total Scaffold Genes: 181
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 141 (77.90%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000430	Metagenome / Metatranscriptome	1149	Y
F024080	Metagenome / Metatranscriptome	207	Y
F037403	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210400_10000048128	F024080	GGAGG	MLLRTLMTVLLLIQLPFLAAQTKPARQSIVELPQGALSRIPSPNGKWTLIFECPKHCSERRLSIEDGASHTRRLVGEYERSLSISWAPDSRRFFVNDAHASNEALSYVYDAVKIKPTDLSRLLVAGDPGAAQFLGAGHSYLRSIRWLNSRELLVVLYGHFDEPPLGGFTLQYRVALHGKVHKISQLARERPE
Ga0210400_1000004815	F037403	N/A	LFDVGLFLRQMDVGFDVAGEGGELLVGGDLFFSALAFAQNTLCGFLIVPEIGGGDARFESFQALAVLRGVKDNSARDGRVA
Ga0210400_1000004826	F000430	N/A	MNFMIRTRKQNPVPVAEPEMGRPAGTGEEWLGRNRSSKRRLWERLNPLSRKQIRVIAEALALQQTHAQLPEPLRARLSATVDEIERLVARTRALLAEVARRTPPRA