Scaffold Ga0210400_10000038

Overview

Basic Information

• Taxon OID: 3300021170
• Scaffold ID: Ga0210400_10000038
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 243841
• Total Scaffold Genes: 222
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 164 (73.87%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000549	Metagenome / Metatranscriptome	1036	Y
F000807	Metagenome / Metatranscriptome	883	Y
F006029	Metagenome / Metatranscriptome	383	Y
F016298	Metagenome / Metatranscriptome	248	Y
F016836	Metagenome / Metatranscriptome	244	Y
F017187	Metagenome / Metatranscriptome	242	Y
F023670	Metagenome / Metatranscriptome	209	Y
F025223	Metagenome / Metatranscriptome	202	Y
F031369	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210400_1000003810	F023670	GGAG	MATDETKRAAQEFLAAQFSEATQIEEDRLNREAAVALAPNVWKRVAETFMAQCEAWNAITKTESLTCKETILGDLRIRCAGKPDIITVHYDSKKLQVILKNTARLEHEGDSTFFIQGYNGGTEADLARNNQRANLNVVVLGELRVLAGIGRTAK
Ga0210400_10000038101	F000807	GGAGG	MPCKSCGSVNQKKFSGEMGIHFPGLKNINKPVVWVFPELVICLDCGTAEFAVPEAELRVLAKGDTAAAG
Ga0210400_10000038174	F000549	GAGG	VQAQRQKKVARAYRVEGSIVLYRPTARRQFKVGRTPVRAEPWWGVVIALPLFLRTLVRLAIACPHWHKGPPITVRELIPSHLPWRSDYGPGTYITCLDCGQKFEYDHKARRMVDYWGIRDVEARAGVRRKISEFFSPVRGFAARLGWIHTRIPMSGIAGSMNRPGILMKGH
Ga0210400_10000038198	F016836	AGGA	MHRFGVLFLCSMCVFGVTVRGQSTNVEPIHARPGAVLTFHVQTRLNPADRNETDALPHGTVIRVKMLSEVDSGVDRDGSEFRGEVVDSVSAGSKVIVHSESEAKGILVLLRSRSHPDGFRYELLVTSLTDHGKTYDLTASLNPSFFDAGAPAPISKTEAQSEPRTNDTGSASVPASPLHN
Ga0210400_1000003835	F017187	GGAGG	MRVSNWFAMKSLMIAGAGILFLACAPKSRAQSDDVAGQYVCSEARVAGKSVACTAPPLSLKSDGKFELQGREGDYLVSGNWVELNGTVLKSRAKREAGHKIVFRFTNSKGACEMIYERRVAEMGKTKLG
Ga0210400_1000003866	F016298	GAG	VDATADGPLAAASGPYTETKVNEDERDLTAERVGYAWKNFEDQQAIIRAADLKAGYLVTFLLFFGASTIPLGKEVLPALRWVSAGEIAASGLYGASYVVFALGFVRALYLISHVLTPRIARHHAKPTDGRELLYYEHVARYENSAAYYEAMTRATPEEMLRNVTDQVYELAMICKVKVDSLRAFSQAFKITLVAWFISTGVGFWIMTWMK
Ga0210400_1000003879	F025223	GGAGG	MLVLGKVALGLGATLAATGAYVFHEGVIRVDVDEHRQGGSHVHFWVPATVVATGMHFIPKDQLNHTTAEVRPFLPVLREVAKELEKYPNAELVDVSDARNHVRIAMEGGRLRIDAVSEDGDVVHVSVPARVLGDVADELEEKAPGV
Ga0210400_1000003883	F031369	AGG	MGREEELRQERQALRLLCSNLIRAATRVELCNLLDSSLFQDTLHRVAFEEIRAAGAVPAKRLREELPGRITNRGFPDFELLEFLGKDLATEGEIEQLFMSVLRMIQIRHESDGSELEN
Ga0210400_1000003898	F006029	AGGAG	MKKSFLLVSTGILFTVLGCSGSSQKDVSKSTPTVVQASVVPASTSPEPAAALPIPSVGQAHQQAWHSENVEDRVGNALVLKGTSLDSKFDLVILQKGKYSFLSFVRHARWESVSKQAAKGKLVYLRVKFEDGQEKRVEWDELGFATENLYSVLWSYPAKTDAPIGQVLGGATGDSVGGDQLLLEDMMKHKTMLLEVEPGVTTQFDLTGLAREILKVRAPQSQPILEASQTAE