Scaffold Ga0210400_10000028

Overview

Basic Information

• Taxon OID: 3300021170
• Scaffold ID: Ga0210400_10000028
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 269039
• Total Scaffold Genes: 253
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 209 (82.61%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001920	Metagenome / Metatranscriptome	617	Y
F002886	Metagenome / Metatranscriptome	523	Y
F003584	Metagenome / Metatranscriptome	478	Y
F012370	Metagenome / Metatranscriptome	281	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210400_10000028158	F002886	GGAGG	LKTAFRKISRVGSLTGGTKWYLSEDCLLAAKRMMYSVEYRRFYLRDLESIVVLPNRAWLWRMGLVVLLFAGLGLVFWRWVDSTAGAIFGGVGLLWVAVELGLGPTAGARIRATGVSVDLPLVPRTRRAPKVLAKIDAAVRSARDAGSQPTAPGTGAQPAEPILHTGSESPSATVSIPDVPQTHGS
Ga0210400_10000028161	F001920	GGAG	LFDSGSHGGRALNWRGPLLAAGIFAAAFAILLLMAHQNQSTTSDMGSSLREDPYGTSLLFDSYARAGYQVKRSQDEDSLSDQSAGSTTAFFIGGYPYNDWEYGQGKLRNVGKFIGRLEAFLGRGGRIVLIQPAWKLKSESQGWEVENKWNNNPKDSGPTWISPDLREMPAGSEMMYLGADAPWLKTNEHWTVLYAEPTKADAKPDTSGNVYMAIRRVGNGELIAASQEWFLLNETIKTRPNPVLLDFLTGGRPVIWVDETLHGLQQSQGVLWLVQRYRLQVALILFWAALLALLWSMSGNLVRRPRRDQIAQIVRQGEGAGVAARHLLQRSIPADHVVAECWEQYRRRSLHDAEAISADPRFGPRLRAALARPALAGYKELSQLIAERHASAKGLALADSLEPDSSTAEPKIIPKEARIA
Ga0210400_10000028171	F003584	AGGAG	MKPIAFIGTLFAALLLLAAFSAPASAQSNQSGCIAHRPKYIEGIFEVKYDSGCTGHDEPELDPVSSLPGSAKELTWTVVLPTGGTFPVSALGPTFWFGGAVTDPKSLFGQSFVELQFYPDSIVSSCSQSGGFEVKFAPNKYSVCSPVWRLTSTGQKGTFHETAAFNAMLTDGTGPNNPLIMHAGDTVTVHWFTTAAQDGFHVTVNDLTTNGSGTIVLNSSSTGPLMPPFDTQTIGNALGWGAVNDTPNSFVWEIGHESTFTGGGAFCVAGEVGCDTYNAASWTGTSPIQIKSVTFGDGSQAKEFAAVSDLGGKAEILATCSVYGGPYCIYPWYTLGTSGYQFGVDYPDTLKDFGQADQYQQTLLCGGPFGADSTYCDTVLK
Ga0210400_1000002831	F012370	GAGG	MRGKMRRSVWLPILLLSCQATGWAQKGSTGVVDRERERRSFAQVLVKAINAAEADYHKKHDVYANWDTLVGIGDFSSTGTKWAPADFPTVAHALYGNGAEIVPGWRLRLHLSKDGKAYDLLLEDVTDPKCGYAVVTDERGLIRQGKSIDCAV