Scaffold Ga0210400_10000022

Overview

Basic Information

• Taxon OID: 3300021170
• Scaffold ID: Ga0210400_10000022
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 290066
• Total Scaffold Genes: 264
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 226 (85.61%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002473	Metagenome / Metatranscriptome	556	Y
F023662	Metagenome / Metatranscriptome	209	Y
F024035	Metagenome / Metatranscriptome	207	Y
F031275	Metagenome / Metatranscriptome	183	Y
F036945	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210400_10000022126	F023662	GAGG	MRFRTAVALGTFFLLCFTISLWSVPLIAEAEPLRNSPEPSSVSGRVATVNDSLFTLELNRNQNPNKLEFVIDSRTTIEGKLAIGSNATVDYRAEGPRLIATRVVVLPASGIQLY
Ga0210400_10000022140	F031275	GGTGG	MMAAFILAFSLLTLLMFFVSYCRSLTASSLHTSISEDVRDVTGIQVRAAGRDYARVMQILQLCPDRPEDRSSLQIVGAYFSFLNLLEQGFARISPSLRTWAEEERASCAHFAAVALGRRIALNRELLAQQVEL
Ga0210400_10000022199	F036945	GGAGG	MWKRKCPLCFVRIPWTVALAHSYEIDCPACHAALELSRFTRLVGAFGGIAGAYVAFHLVRWNLHGLSWAAPIVAAILTFGIVSALFVLIAGDLVVRPKPGVESFPHPAE
Ga0210400_10000022246	F024035	AGGAG	MKKRILLCLAVVLMSCLTAVAQDAKMQPLTFWYEYTVNPGKDAQFMDLVKTVGAPVRDKLLADGVILAWGVHVGLLRAPGNSTHIIWYSVADWSGIEKVDSAMRAQIAKLDEEATKSGTAKKGSSGGATVTARMMEAADVSKTRDYITRDLVFVTGTGAPPAGVLPWTRYNYVKVKPGKGGDYRKVWEKYNKPVLDKLVADGTVLAYGLAVEEVRTDGDFTHFVWYATKDLGGFEKIRAAYMADRDKRSQEEQDAITAEFLKTIDPDASRSEVGRSIMFKVGGMK
Ga0210400_100000225	F002473	GGAGG	MTINDLPAIMGTVLIVAGLALVGIYTRFRTEGSEKSVQAGALLIVVGAVLLGLSLFVPQA