Scaffold Ga0210400_10000020

Overview

Basic Information

• Taxon OID: 3300021170
• Scaffold ID: Ga0210400_10000020
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 299232
• Total Scaffold Genes: 241
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 182 (75.52%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000131	Metagenome / Metatranscriptome	1986	Y
F006273	Metagenome / Metatranscriptome	377	Y
F015305	Metagenome / Metatranscriptome	255	Y
F020310	Metagenome / Metatranscriptome	224	Y
F064931	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210400_10000020153	F006273	AGGA	MSTTPTAIAAEQAKFLPRMRGFLGAALFLALRRFPRLLQLHRNKSSWALFRFALACLGAAVVVLPLSLWNGWITAIFGLALFVVAILLPPAATESSTDRKARELGAQTVVSGGEYQPGNAPAATVRLFISPEHVWALDSHFHPLVVIPVTEISRMRLEPAASGWLLQVRWGDHKAEFSYHGIFAERFAKLAQESILAANPSAASMARKQRAAGA
Ga0210400_10000020215	F064931	GGAG	MEDELFYKTAFCSEYERLLCVCVQSLDTWKNRREEIADSVVRSWEAGDELMRLQANYAKAYSRLEKHMDNCELCHFVSKISGRNYASLSTAVMDKKHSA
Ga0210400_10000020220	F015305	N/A	MGQFAVYYWRAVFTGMASLPISSRVLEAAQVQEASLCGNDFEKFASLLTFTPELKETKSGLGMVRAYYTAVQSAETLFAKFSPMMASWAEKERVLCARIAAVYVDQRLEANLIQAASIRS
Ga0210400_1000002059	F000131	AGGAG	MKNVKGNAQVVNRFTAGLSLIFFLGIGLRNTRAQEVPLEAVVTPSTMIVKNGKPVTFAIHGFIEFRSLAEVFPYIDAQTQRWDGKISEEEKRRLARELLREGIESRVVSMADERLLQALVTHTSSELREVIAKVKEPVPAGYVQEFAAVQEKWKHSLNCWSASPAIAGRVLSNWYPIEEGIRLHGAVYDSTEHFWQGVKYHPDTTVGDLKGLVTLLQGREWGAWLKRLDDDPKIYLANAYAVEFLRHNLKAERLKWFGEELGKHGLRDGDHSRILQQRGDSAFRFSGFEEKVLWGDLADLLHMVYVFSPADDSIRKVLAQHHFDGIYLDGRKMGFISEEFRVEMLEIWKVKFLEISRFREVIAGIPMEIRLEHFLNDGDSPDIPLSIYVPYLNRIREMASTRK
Ga0210400_1000002067	F020310	GGA	MPSNSKSRSPAKELAAVLPQRLSEALLRERTIPRFVDSYVVEHGRHSLQVHAVLYRDLLNLLQREALLTVTARVLEIVTRGLHTEDDRKAKPMARQEAAAFRQKFLAGLTRHHCWNVSDALDFQSDLKMYEDLIARAASSRRPRKRFEAANHPFVDRCAFVLDSSFLERARLAATRTLEDLETLGAQIAAEVLRSRLKGSDL