Scaffold Ga0210400_10000013

Overview

Basic Information

• Taxon OID: 3300021170
• Scaffold ID: Ga0210400_10000013
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 372411
• Total Scaffold Genes: 362
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 277 (76.52%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Associated Families: 14

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000512	Metagenome / Metatranscriptome	1064	Y
F000703	Metagenome / Metatranscriptome	928	Y
F000739	Metagenome / Metatranscriptome	913	Y
F000781	Metagenome / Metatranscriptome	895	Y
F000885	Metagenome / Metatranscriptome	849	Y
F001178	Metagenome / Metatranscriptome	756	Y
F001959	Metagenome / Metatranscriptome	611	Y
F002025	Metagenome / Metatranscriptome	603	Y
F002138	Metagenome / Metatranscriptome	590	Y
F002750	Metagenome / Metatranscriptome	533	Y
F004193	Metagenome / Metatranscriptome	449	Y
F006480	Metagenome / Metatranscriptome	372	Y
F043538	Metagenome / Metatranscriptome	156	Y
F074441	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210400_10000013182	F001959	GGAGG	MKNLDSVFAAYLIGWGVFFVYFLTVARRTSVLRADIERLKSSLDRGK
Ga0210400_10000013199	F000703	N/A	MRVREYTEQDFEALRTIHAAQGFDYPLPDLSNPLFVTKLVLAGTPSSAGEGKYEVLGAALLRLTAETYLLLDPRAGTPRERWSWLLALHAAAEHDAWQRGLEDVHAWLPPPIARKFGKRLERLGWVRDDTWTPFCKRLEIRD
Ga0210400_100000132	F043538	GGAG	MKARYIKILTMALLTLALSSAAKAQKTSDIINRGDDFLAVCQYDNNHPPDVCLAYVAGVVGTLALNWADTGQRICVPDTATVRTTLDLVLQYIKDHPEKREQKPIFLVAQVTIKNYVCEVPKQHTATAPKAEPEPKARP
Ga0210400_10000013200	F000781	N/A	MLTVAQLAPLKDRDPYLYETLVKIVSSVNATSQRAGVDPSTPAPAPSSIASLAVQASNGWFDIAIIDPSNARPGLFYFAESDTTPAFSAPRVYFMGASRNLYVQLGNQTLFWRAYSQYVGSLPSAPVTFGSPPTAVTGGGATGPAPLPSSGSGVLPNGFVRGANGFGVNPGSRVLRQVLL
Ga0210400_10000013210	F000739	GGTGG	MNKLQIWLKGIFAAAISGGSGGVLTGLAAVGIDPQHFNLQAGIGATLRIGVAAALINSVIGVAAYLQKSPLPDGN
Ga0210400_10000013211	F000512	GAG	MISVLRETHQPSPSIEERLRLAGGCNRYGDANYRAVWGWNRLAWIGGKFEERDEHGALLRERIELRREPKYPAVNRWHIERWVPPEVYGSPRAWYAQTVEIADGRSIPALGPYPSRGEYEHCFTLESPRGEFVQLTPTIGEHIARAIEWSRGVPRSTRRRRIDDRERRKDRSYEAWAYDLLDDSVPAFHKHSFVTVA
Ga0210400_10000013212	F006480	GGA	LFSGAIAARSLPAGKTAPLVFVFHRVDRTHDVAILRPMIAPDIGVQLDSGPRMLELGTVLRCEAASRTHGALVEGQVGKVTELMLDCGERKFVVRTLDFSPRAK
Ga0210400_10000013218	F002750	N/A	MFQLVKTLLRSRYVRLLEEEVARLRAENRALMNSLLGTAGFPPVEFPEAPKPQSLPRLRKRSWHQIQAWKEAEAGSNEAAK
Ga0210400_10000013221	F000885	GGAGG	MANEKTVFIGEITQLAGVAAIVAGIVLSLHHWPAAAALLGGGCAYLVGKKLRAQ
Ga0210400_10000013255	F074441	GGA	MTNREAIERLSVNKHDHLAVTSLHDNNTEIIRTTVIRYFGTGKVADKAEAALMRRMADHARLYEHHEDPEVWLARCASTECDRLRNEAIREKANKD
Ga0210400_10000013359	F002025	GGAG	MNDEVPKYVTQARVSFLLGIPEPELNRISKESGLGHIERAENEEKTYFTYEELLRICLLAALHMEGVH
Ga0210400_10000013360	F001178	AGGAGG	MMKPSAGLANKVIDQILELSAEAQIRRRETAKGSPEFHKLTGAIVAYGKALALLTALQKREEFYAMVDQFDVAA
Ga0210400_100000136	F004193	GGAG	MHSFPFPKARRSKRVVAKRRASLVINLDRNQRRLPCLLLDSSKEGFRLRGIFHLRRSQVVELIFDEDPLSSKRCSVVWVGKAGSEQEGEVGLETI
Ga0210400_1000001384	F002138	N/A	VNLREFLLENFAGDLEYHPRRATVYLIIGAAAASFWIFSPPETKFTTTPLVFALGSLTLFTKGIFLFRKSSEGLGLSDSDLADLSSSSNRKALPQIPAQAAQLVQDFGAGSLLLWPLLNVGKDIDQSWINPPRLQVAATGAILFFLGWTIRRFTRH