Scaffold Ga0210400_10000012

Overview

Basic Information

• Taxon OID: 3300021170
• Scaffold ID: Ga0210400_10000012
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 374320
• Total Scaffold Genes: 363
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 292 (80.44%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002853	Metagenome / Metatranscriptome	526	Y
F007488	Metagenome / Metatranscriptome	350	Y
F021344	Metagenome / Metatranscriptome	219	Y
F057647	Metagenome / Metatranscriptome	136	Y
F068154	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210400_10000012112	F068154	GGAG	MNPEMQKRAMAARDAHQALLELKKLVDDAAETTHAAEFEAIHLAISSNQESDIRSAFRVIVERLKSPNFGTAVSQVLEKLEVAAT
Ga0210400_1000001222	F021344	GGA	MRGRGMRKKKLDAGVEARRRARKTGLAPSGTRVIPDKRQKPEKHKKNWKEEQEG
Ga0210400_10000012238	F057647	AGGA	MNVLSAGEVTQWFQPFDELGSDYVHADKDGLFFTHPEAACIDLEYPAKLERLPFFAHCVPTIGYEDQHFNGALIWFHNWGVWNLFDEGIGYRIVEKMNAAAGQPKSFEVGLGHQFRADELPDAIGMLLQPMIFAWDSYYLPIWSYGTSEFFLHISHDSTVSIVARTKAFHDRVFQRLEELHLNPKAGNDRRTDRFCRRSTAKT
Ga0210400_10000012345	F002853	GAGG	MGRGAQDQTRQLTDQQLANINSLNQQFLGQQQQVGNLLLPQFQSILNNPGLSPADRAAVTGQSQGALASAFDSLQQAAANRAARTRNSASFSELSDDLARQKGIAEGNQAQQNQLAFTNTAFQRQMAALQGLSGLFGVDSNLLARGLGIPSELLNVRANASRPSGFFSSLGSTLGGTLGALPSAFL
Ga0210400_10000012346	F007488	GAG	MMVREYRESDLAALKRIHAAQTFPYTFPDLQNPLFLTRIVLTESGGAEERIRGAAILRLTAEAYLLLDPAAGTPKERWQSLLVLHEAARRDAWQRGLEDVHAWLPPAIAQKFGRRIEKLGWTRDDDWTPYCKRLVPNDAKL