Scaffold Ga0210400_10000004

Overview

Basic Information

• Taxon OID: 3300021170
• Scaffold ID: Ga0210400_10000004
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 614707
• Total Scaffold Genes: 543
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 432 (79.56%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000180	Metagenome / Metatranscriptome	1730	Y
F000678	Metagenome / Metatranscriptome	940	Y
F004377	Metagenome / Metatranscriptome	441	Y
F009172	Metagenome / Metatranscriptome	322	Y
F013938	Metagenome / Metatranscriptome	267	Y
F045397	Metagenome / Metatranscriptome	153	Y
F088587	Metagenome	109	Y
F103195	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210400_10000004146	F004377	AGG	MASVSVSEGTIRVHRSIAGTGAAFRVAFVPYAEGDDARPAGERAFNHLQEVRAFLKVLGIGAEYIKDVLRQLTMGRSAWVPNVSISEKVLRNAGFVSIGNLARSN
Ga0210400_1000000426	F000678	GAGG	MSKFEEFGKRIDGEVSKLRSVDSFEDFGKQVDEKLAAVKQFVSEDVAPETEKRTAQFLREVSEKLTEAAGWLEARNAARTSKAPKNEAS
Ga0210400_10000004400	F000180	GGA	MTKEHSFVAGDYSDRDLYVSSRTRERALNSAIIRAEISESFEEYLEIFDVFYADDIEVSSATGEDPIRGKDRVRSLLASFLVPLHVMSEIGGLSISIRQTAIPGDVADETHSAWTLDLVGVSGRTCTVTWRALRKWNGSRVVYEHHYDEQQNGGPLTSDDLSFKAANLP
Ga0210400_10000004449	F013938	AGGA	MADERQARLEARARIDIRKFYEKGQITLKDHASAVGYLRGVWFDHLSDIEIEDFICREIRKLEPPAIQPVE
Ga0210400_10000004511	F088587	GAGG	MTLYTLILFIHLTGALTLFLAFGIEWAAISFLGRATTPVEAQTWLRLGRLAPLINGPALLLAILSGGYLASLISAFKQGWIPASFVGIVVVAVLGGAINAPKMRAIRLAIPVGGEKLAAALGNKLLPVSVRLRTFAALSIVFMMATKLPFARCMFALLGGLILGLLFCIPVFARKAL
Ga0210400_10000004518	F009172	AGGAG	MAEDRKDNPGGPGSSDTKKPYAKPSVQSEPIYETLALACGKLPGQGGVCNAAPRRS
Ga0210400_1000000453	F103195	GAGG	MLGQSENEEKSDRECQGTSLNERPCNLSATVHCIQCDLWFCDIHAEDELWHACMKAAR
Ga0210400_1000000460	F045397	GAGG	MSNCSKAVLAVAVLCFAVLFTFFIIRNTAAQEGKPPALPLPEMQKLSKLYVGTWTYTETYPKSSMAPNGGVNTGVYTSELGPGGNSVFNHFHSKGPVGEFDGTIVMTWDPKEKLYKAYVFGDSFPSAVIETGQWEADALVYRYEFSMGTMKFALRNVTKFLPDGKLASDEFSSANGAPEKLLVHVEAIKK