Scaffold Ga0210400_10000003

Overview

Basic Information

• Taxon OID: 3300021170
• Scaffold ID: Ga0210400_10000003
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 623086
• Total Scaffold Genes: 547
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 426 (77.88%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000528	Metagenome / Metatranscriptome	1047	Y
F010061	Metagenome / Metatranscriptome	309	Y
F019161	Metagenome	231	Y
F062118	Metagenome	131	Y
F072796	Metagenome	121	Y
F083175	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210400_10000003206	F019161	GGAG	VSATGYVLKAGDNRKFEVRCHAGEAGMLHVGAQLLSVQIGQRVLREGMEEIWHSVAIYATEDREGNLVIRILVSNPDWDEPLQIAKFTSRPHDPDCLTALGSNLDHVTE
Ga0210400_10000003210	F019161	GGAGG	VEKAESLIRTTEYVLKTDDRRKFEVRCRAGEAGTLQVGAESLSIQIGQRILRHATDEIWHSVAVYASEDREGNLVIRVLISNPDWDEPLQIAKLTSRPHDKDCRTALGSNLTHMTE
Ga0210400_10000003211	F000528	AGGA	MGEWKAQISLRVRQVLRTEMEEFAAREKRKLGNVGEVLLEWGFEQLKAAGSIDRLLKSKVRPSSNQHKKT
Ga0210400_10000003214	F010061	AGGGGG	MLFATVRRGKRHGVRLFPHRYKVDGRYHVSLTREGPHIPLADDRDIPEYLANGYSLGMSNRGADYNPTLIKPDSIRGWK
Ga0210400_10000003300	F072796	N/A	MPRALSSPPNAVELARQLTQALAQERIVPRFVDSYVVENGRHALQVHAPLYRDLLALLQRETLLAATICLIELVGAGPITGKKPTPLTRKDAALFRRKFLVALARERHWNAGDALDFQSDLQIYEGILSRNTGPKRGRKPFESAHHPFVDRCAFVLDSSFMEKARVAATRALMEIEDLAAHIVEQSQNASASPATAKKS
Ga0210400_1000000333	F000528	GGA	MGEWKTQIGLRVHQALRAELEESAAREKRKLGNVGEVLLEWSFEQLKAAGSVDRLLKYKIRPSSSNRNA
Ga0210400_10000003374	F083175	AGG	VLVLFSFLAGCESHPLTDYRPAVQAGIFSGTIEDLKKLNASDTEIAEVIQLKKAGISEDTILALVRIAHEHQHPFTATGSVKSLAGANFTEPRILQIAQTDQIDAIGGDAVMLRVIGLSDPTVQLLLDRRLKGIPTMSVGTIADLKNTGLTEKDILYRIQQGMTDAQGEAEANARHKALVHSNTGFKRIVGSKRR
Ga0210400_10000003531	F062118	GGAG	MTFAAHLPGYKIYDALKDSAFRMGVYIGLCLFAVFVGWLVAANRFAVFERFAFERNVLAVAVMGLFAAIPILRFIRRPGSLLASGLVAWAIFSFLYRIICLYFAGLSSWHSAWQVFMAGFLLYLIAATLAWLVGLVWRVRASHSAPRQNHQLT