NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210400_10000002

Scaffold Ga0210400_10000002


Overview

Basic Information
Taxon OID3300021170 Open in IMG/M
Scaffold IDGa0210400_10000002 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)648855
Total Scaffold Genes623 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)490 (78.65%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000915Metagenome / Metatranscriptome836Y
F002013Metagenome / Metatranscriptome604Y
F008002Metagenome / Metatranscriptome341Y
F013583Metagenome / Metatranscriptome270Y
F029221Metagenome / Metatranscriptome189Y
F080585Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0210400_10000002220F013583AGGAGMSWLIRTLRLPARESYTNLALAVCVFLMSLMSIGLIWQAQIISNQRDAIRWLESMKFGG
Ga0210400_10000002478F002013AGGAMEKAHLYEALYLVNHGIDEAVRGVQRLKKCPKLFMETYHKSMAGLERRRAIINLQFMLEMRKLEEDDESHFEEEFNVWLSDEPLTNEEICGLMREVEQQRKQEGKLPLVQFLTPRKRSKKSGKENGTIRSNGKPNGAPTQQSPRESVILKED
Ga0210400_10000002517F029221AGGMKRISTLFEIILSVTLFVLGLYLLYQGGSNKSANEGPIVIGGAVCFTLGVMTLISAVRSIIWHQRMLRQSMPNHDLDSNAPGHNGA
Ga0210400_10000002539F080585GAGGMGRLALVVLFCLGAVTGGAKAQNPEIRPVHVPAGTVLTFYLQTRLNPAGGNALDLLPKGTVLNIKVMDTIDSGVTNDGAEFRGLIVAPLLSGNEVVVRADAEVRGVFALLRSRNHPDGFRYELLITSITDGDKSFRLTASLNPSFLDPVSQPASSPKQAIAPGAAVTGNNGNSGSASSMH
Ga0210400_10000002615F000915AGGAMTHENNLATASLFDGNAYKSSQAAELTLNAAILRAEIARSYEEFLEIFDKFYADDVEVSNEDSPETIRGKQRVRPFLLNFLVPLHVMAEVAGLSISVQQTEIPRDTANETHSGWRIDFTGVGGRRRTLKWSAIRRWKASSVVYEHHYGHEQIGGPLTEDDLNLDWGRAEAGFQLPS
Ga0210400_1000000270F008002GGAGMQAGDQTGAAILVQTIFLKDGHLQGLLGERASKSPEAAVDFLKPFYMAALAMVEKANSQ
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