Scaffold Ga0206687_1105180

Overview

Basic Information

• Taxon OID: 3300021169
• Scaffold ID: Ga0206687_1105180
• Source Dataset Name: Metatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3101
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010105	Metagenome / Metatranscriptome	308	Y
F012164	Metagenome / Metatranscriptome	283	Y
F014036	Metagenome / Metatranscriptome	266	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206687_11051801	F010105	N/A	MKNLHTFESLNESKDMDTIKKMVLDYAEKNGKSKWKELQALIVKDKGLDPADRKNRGYFSSYFSGGSDFLVRRGLDKGAGKHGRSANSHGLLMRPTKKDPRYLEKDGKDYIVKVWDGKS
Ga0206687_11051808	F012164	GGA	MSTELKTLKGKFWNQETSELENTELSLTRFSGGKEGMKVQLTIRSNNKFFTHIALDREQIKNLVKELQQNFDI
Ga0206687_11051809	F014036	GAG	VILDFLGILFILLLSFVFHCVVWEDDWVKEWYWKTLIGGSILLVAFMAIMGY