Scaffold Ga0206687

Basic Information
Taxon OID	3300021169 Open in IMG/M
Scaffold ID	Ga0206687_1069781 Open in IMG/M
Source Dataset Name	Metatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0206687_1069781 Open in IMG/M

Source Dataset Name

Metatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015 (Metagenome Metatranscriptome)

Source Dataset Category

Metatranscriptome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6208
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (60.00%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

6208

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (60.00%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.7468	Long. (^o)	-122.0193	Alt. (m)	Depth (m)	30
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

36.7468

Long. (^o)

-122.0193

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008747	Metagenome / Metatranscriptome	328	Y
F032291	Metagenome / Metatranscriptome	180	Y
F103296	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206687_106978111	F032291	AGG	VTAVGVPLIAPVVESKDNPAGSDAETVQEVIGPPLTVGVVVVIEVPFVNVNELGLYERPDGATSLTTIVTVAVSLPPVLLAVIV
Ga0206687_106978112	F032291	AGGA	VTMLGVPLIAPVDESKDKPAGREGETDHDVMVPPLTVGVAVVIAVPLVSVNELGLYVSEDGATSLTTMVTVAVSLPPVLPAVMV
Ga0206687_106978113	F008747	AGGA	VIAVGVPDIAPVEASKDSPAGSDGDTDQEVIVPPFTVGVTVVIAVPLVSVNELGL
Ga0206687_106978114	F103296	AGGAG	MSFTTMVTVAVSLPPVLLAVMVYKVDEVTAVGVPEIAPVVESKAKPAGRVGETDHEVIVPPLTVGVTVVMPVPFVSVNEFGL
Ga0206687_106978117	F103296	N/A	MVRTAVSLPPVFSAVTVYEADEVTAVGVPLIAPVDESKDNPAGSEGETDQDVMVPPLADGVVVVIAVPFVRVKLFGL
Ga0206687_10697812	F103296	N/A	MVTSAVSLPPVLLAVIVYVAEEVTADGVPPMAPVEASKDKPAGSDGNTDQEVIVPPFTVGVTVVIAVSFVSVNELGL
Ga0206687_10697813	F008747	AGGA	VTAEGVPLIAPEDESKDKPAGREGETDHEVIVPPLEVGVVVVIAVPLVRVNEFGL
Ga0206687_10697815	F032291	AGGA	VTSVGVPLMVPVEESIANPAGRDGEIDQEVTGPPLVVGVTVVMAVPFVSVNELGLYVSEDGATSLTTMVTVTESLPPVLLPVTV
Ga0206687_10697816	F032291	N/A	VEESKIKPVGSVGEADQEVTIPPVIDGVTVVMAVPFVNVNEFGLYAKEDGVTSLTTMVTVAVSLPPVLVAVTV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206687_1069781

Overview

Ecosystem & Geography

Associated Families

Sequences