Scaffold Ga0210406_10194575

Overview

Basic Information

• Taxon OID: 3300021168
• Scaffold ID: Ga0210406_10194575
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1684
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000321	Metagenome / Metatranscriptome	1304	Y
F021825	Metagenome / Metatranscriptome	217	Y
F105673	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210406_101945751	F000321	N/A	MIGVLERPLKVMYISHAGLQRTCSCRNPSPKTVGMAAKRRSVHFGVYNVRLLSALDKLLRDKPRYLGELSTSINDALLAVDLNAVELVTLQSRQKQTGRETQVVILRRLRKRIQQVARKRKCSMNQLVNSALLAYYSKTGKIKAKRSAKRRGVSTHSYDAMSDLERRELHRMLSELSRTRSVSVTAEEPDGTHYEY
Ga0210406_101945753	F021825	GGAG	MGKEYQQCLDKLAAAAPETKSALIRSLLPGIEAALGSGQRLKAIWKALRKEGLQISYRGFHMAVSRARRKPTAASSQGKQAKSAGAQALAKKQVETVEERDPLANLKLLEENRPGFHWRAAKSLNALVHGTEDSNDKNKR
Ga0210406_101945754	F105673	AGGAG	MTSTWIIGERRGYWNIKGWGHFVVYFRLNCLRFLRFGWYHFEEKVVPLWYRS