NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210406_10067019

Scaffold Ga0210406_10067019


Overview

Basic Information
Taxon OID3300021168 Open in IMG/M
Scaffold IDGa0210406_10067019 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3095
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000461Metagenome / Metatranscriptome1108Y
F000788Metagenome / Metatranscriptome891Y
F028639Metagenome191Y
F042506Metagenome / Metatranscriptome158Y
F068584Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0210406_100670192F028639N/AMPLYWIVYRHNNQISVVIEPGASLIHARMRAALAELDEGEFTESHKLDRRWQVPKERNAD
Ga0210406_100670194F000461N/AMDKLLFWLGIGAAQKSAGSKPIDSRNWVVSLVVGALVAAVMIVGMFLLLVSQKL
Ga0210406_100670195F000788N/AMKPRTVYEKAVQDFIQTARLQATLNQHFRQASFAEFELLMGLDDEVLKRYGLPRPILERALIEVYRTVVLRQ
Ga0210406_100670197F068584GAGMPNILNPIDLADRAIRRAVFGVLDAAEHRAKPHRKRELLRMQKREKHQVREFIGGRP
Ga0210406_100670199F042506GGAGMNPVQACSICGGAIVGFGNAAWPVNDNRCCDQCNAERVIPALRCRERDAKREGSNGGGLQMIDLNDIEDDSFLAINATDLRWLYDLWVQLAHESRPLDRQAAAKRLAGC
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