NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210406_10059883

Scaffold Ga0210406_10059883


Overview

Basic Information
Taxon OID3300021168 Open in IMG/M
Scaffold IDGa0210406_10059883 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3304
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001426Metagenome / Metatranscriptome697Y
F003382Metagenome / Metatranscriptome490Y
F024147Metagenome / Metatranscriptome207Y

Sequences

Protein IDFamilyRBSSequence
Ga0210406_100598832F001426N/AMRSWTPQTLYDAKPWVFMALGAILGIGMMLWSLSAGLWTVWRGLLCLGGVALAIVGGATLQMRQDYRAKSKWRRDAPP
Ga0210406_100598833F003382N/AMALNFARLAEERPWAAELIVAGAALLLGLTLMPVLIFYAGVAALGRFDGASLGHLYASLFEGLREASIASWVVFLGPYGLYLLFKALRTWWRVSARLNPP
Ga0210406_100598835F024147AGGCGGMASDDRNSGNDDSNFSFAVRELRQAKSARTLTLDPGPKKPSYKEQGSDPYNTSGSFDRTKNWTRVGKR
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