Scaffold Ga0210406

Basic Information
Taxon OID	3300021168 Open in IMG/M
Scaffold ID	Ga0210406_10016977 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6882
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (60.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

6882

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (60.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000688	Metagenome / Metatranscriptome	937	Y
F008511	Metagenome / Metatranscriptome	332	Y
F016091	Metagenome / Metatranscriptome	250	Y
F053492	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210406_100169773	F000688	N/A	MAMTHFPQPNVNQRSPRVNLFGSITAAVMAEGGQRARAKLQTISITGGLLQLQHELSTGDFVEIAFHTRSGAIRGMAEMLHPTRKYQSACLQPFRFIALGDDDHRKLRMALDSALDRRFLDPASEQLRTPLGF
Ga0210406_100169775	F008511	AGGTGG	VSAPAPALAKPPRPRVIVRLADASVAVASLSLIFGLLLVFFPVSFPRIIITSWQRGYLTAVLMVFTLVLDAFLYLRAAYLRSAKPTILVTACLGSLPIIVVGGLSFLMESAVAQTISLDLPNLQARINEEVLAHTYLGLVSAVFLPFLAIRLLQQFKATS
Ga0210406_100169776	F016091	GGAG	MSLKWPLWIGLYVVMGVLVPWATALSWAHQHGSELRPRPRQLFQRGELGLVGLVVVISVIWNLLQSQFMPQTIALATVLLAVIGTMSGDVWIESYCRQSTGTAWNSERTWRDSRNLAFLVFTMASVVEILLDRFAKVAAL
Ga0210406_100169778	F053492	AGGAG	MREPGTIFRAIRRAGSASSLRSSRAIISVRVMSGESHHGAKKVGAVIYLATNRPLHLPDFLAEFHQSWPHLLLQKTGKEPHRALFRVGKSDFALELHHVPVPQDVTGPVVHSTLHWPTAGAALAGHQAHLSVVESAENSGVLILACDLTKAIAALLPVTDSLAVCWLNGPALNSSKSFVDTAREMFGIGLYPLSLWVAVRWDAEAGALHTKGMAQFGAPEICVSKQPNVDVLMVDYLFHVAQSVLTLHHSIPDGKTMDSPQGKLKIGKSGAPGRRVLILEPARSG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210406_10016977

Overview

Ecosystem & Geography

Associated Families

Sequences