NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210406_10013632

Scaffold Ga0210406_10013632


Overview

Basic Information
Taxon OID3300021168 Open in IMG/M
Scaffold IDGa0210406_10013632 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7809
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026812Metagenome / Metatranscriptome196Y
F050161Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0210406_100136321F026812N/AYWKQVQGAGPEGVSCLKEMLAAEKTDHIFQFDAASFLFQLDKSPESLNLVKDAIVQTDFQETDPANYLSLALELGQRGVNIQSLAARLLLFPNAIIHISEHSLDLDSDTAALFLYGSMDSAKASKALITQLQAQEPFVRAAAAHLLGEEMTEDAFRTLSTWGGLADVKEDYRRNDIQAVMKYQAPDPAEFANPKWTREQVLKIIAGLPHTRKEFDDVMGTRGAEFDKQMREKKPSQEDLAKAVSESEPIYGISDRTAFQNSAVATLKAEDFDTLREARRKALYNISDESLSEYLAYTQVMIRLLNRLDLYKDYRAH
Ga0210406_100136322F050161GGCGGMPALADGDVALRETSQRLVERVAAIPGLHGALRLEWHPDARWSEGESNRWQEILRGEFEKRSLNLTEDPGAPALDVFAAQTPTQVVLTAKTRISDRDEVRIVSVARALLPPGSLPAAPVRLERQMIYESPDRILDASSVGNGAEAGLAVLLYRNFEIVALRVDARGAVKQSVSLNPGNLKPSRDPRAEMTLRGSMVFVELPGKSCEFLWESPAEVKCRAEKPAAADKSVWRGATLLTSPCDGNSWKLLNSGSDPNTREVLQVVPDGPLRESSAAVLSEFPGPILGTNGEQNPSSTLVVAQNLRTGNYEIYKIALACGN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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