Scaffold Ga0210406_10013272

Overview

Basic Information

• Taxon OID: 3300021168
• Scaffold ID: Ga0210406_10013272
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7934
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000781	Metagenome / Metatranscriptome	895	Y
F002853	Metagenome / Metatranscriptome	526	Y
F006229	Metagenome / Metatranscriptome	378	Y
F007488	Metagenome / Metatranscriptome	350	Y
F009917	Metagenome	311	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210406_100132722	F009917	AGGA	MGTSGWTYLVVVFSVGAQLVVFLRWMHRRMRDDEIQRVFVRALALRHLPNIYRALNIIAERQGIKLEEMPSVNYVDLRNGERSR
Ga0210406_100132723	F002853	GGGGG	MGRGAQGQTQRLTDNQLNQTNALNQQLLGQQQSVGNLLTPQFQSILNNPGFSAADKAAITGQSQGALAGAFDSLQQSVANRAARTGNSAGFSELTDQLARQKGIAEGNLAQQNQLNFSNTAFQRQMAALQGLSGLFGVDSNLLGRTLGIPAELLNVRANSSRNNGGFFSSLGSSLGGALGGVPGLFL
Ga0210406_100132724	F007488	N/A	MKIRAYEESDLEALRVIHARQGFGYAFPDLGNPLFLTKLVLGREEGGKGIAGAALLRLTAEAYLLLDPEAGSPRERWQWLLGLHEATRRDALARGLEDVHAWLPPEIAKIFGKRLTRLGWVRDDEWTPYCKRLR
Ga0210406_100132726	F000781	AGGAG	MLTVAQLAPMKDRDPYLYETLVKIVSAVNATSANAGVDPATPSPAPPAIAALKVQAANGWFDLAITDPAVTRPGLFYFAESDVTPAFSAPRVYFLGASRNLYVQLGNQTLYWRAYSQFVGSLASAPVTFGSPATAVAGGGTSGPAPLPSSGSGALPNGLLRGGNGFGVAPGARVVKQVVL
Ga0210406_100132729	F006229	AGGCGG	MNKQSDVVSLVNISTQKWPARHRTYFGSLTIQSPEGGAAYAVTPVRACTSMMDLGDKRTMEIRLSAQEIAEDLVREINGDSGEGSYHGVFVAAGTEPTKEELADAQKKLEAFQRRLVETADLEWERSHNMMFITDLERRAARELGLEKPWLYDPKPMADCPACGEKIRPGVAVCRTCGAILDREKAAKFGLAEREEKWSGEGRPQMDKVGDKGKRGSREADSR