Scaffold Ga0210406_10006011

Overview

Basic Information

• Taxon OID: 3300021168
• Scaffold ID: Ga0210406_10006011
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12622
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (63.16%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000188	Metagenome / Metatranscriptome	1692	Y
F018221	Metagenome / Metatranscriptome	236	Y
F086235	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210406_1000601114	F018221	AGGAGG	MPRRGMGRQPMGGQRGASKAQAVVPTQREVLRDVMLAAGKYGAWMTLHELARLTRYGETSISAQLRHLRKARCGGYVLEKRVRKPEVVSSEEHFVVWEYRLTARRRVPAHGGAASRRRTI
Ga0210406_1000601115	F000188	GGA	MSVKPELAFDVCWEVYRGAREVLEAKRGMSAMDWKEATKYLWRPDFRPRLGEWVADFALAGQAALDGPDWASRMVMFRLYYLGMAPYENARHFLGLSERSWVNWSEEVRRRCGKELLRRGMFPPRKYFRSEC
Ga0210406_1000601119	F086235	GGAG	MNSKLRFISGVSVLFTTLAFGHIMVHDTQHMLSHHEDNQFFIVAHTIVAIVLGVLSLAGGFCLLTGTRRQTAPKSPESN