Scaffold Ga0210406

Basic Information
Taxon OID	3300021168 Open in IMG/M
Scaffold ID	Ga0210406_10002096 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0210406_10002096 Open in IMG/M

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	23302
Total Scaffold Genes	29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (65.52%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

23302

Total Scaffold Genes

29 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (65.52%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000188	Metagenome / Metatranscriptome	1692	Y
F000512	Metagenome / Metatranscriptome	1064	Y
F000696	Metagenome / Metatranscriptome	931	Y
F000739	Metagenome / Metatranscriptome	913	Y
F013395	Metagenome / Metatranscriptome	271	Y
F044929	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210406_1000209610	F000188	GGAG	MSVKPELAFDVCWEVYRGAREVLEAKRGMSAMDWKEATKFLWRPDFRPRLAEWVADFALAGQAALDGPDFASRMVMFRLYYLGLAPYDNARHFLGLSEQSWVNWSEEVRRRVGKELLRRGMFPPRKYFSNAA
Ga0210406_1000209613	F044929	AGGAG	MKRALQLASGISVLLTTLAFGHIMVHDTRHIMSHHDASPVFLIVHTILAVAFAVLSLIGAYFLLTGWRRPSAN
Ga0210406_1000209625	F013395	AGG	MLRPCYRGVNRKASNHAQMRRALIGGTLLLLCGAIAAHSKTESLLFVFLRVDHGQDVAILRPMIAPDIGVQLDSGPRQLAPGTVLTCEMVAREHDAIVEGQVGKVSEMVLNCGEHKFVVKTLDFAPQRK
Ga0210406_1000209626	F000512	N/A	MIQVLRETHDTPEAVARSLEIAGGINRFREPNYRAVWGWNRLAWIGGKFTERDPATGALLREVVELRQEPKYPAVNRWHIEKWLPPETYGSPRAWWTQTLEVEGGRSIPALGPYPSRGEYEHCFTLEGPRGEFLQLTPTVAEHIARAIERSRRRARSAGKRALYGREQRHERAYDAWAYDLLDDAVPAFHRQPFVTVQ
Ga0210406_1000209627	F000739	GGAG	MMTRVEIWLKGLLAAAISGAAGGVLTGLAAVGIDPQHFNLQSGIGATFRIGAAAALINAVIGVAAYLQKSPLPAE
Ga0210406_1000209629	F000696	GGAG	MPVVGSSAYNTAGQITSLVRSLLNDSQGNLFTDTVLLPYANSAYRKTQRALGNAGGGGFIQDDVLLVVPAVAQVDTSLQVSITDATAPPNQLPTDLLLPAKIWERSNGSSDDFVEMADLSQHGGLPSREQGLTLGVWEWRADGIYFLGATQDTQIRLRYVKAYPDFTDATSPVLVRNAQEAIAYATAALAGWARGSPLAEKWDEAAGDALEDLVAAAVRREQQSARRRRP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210406_10002096

Overview

Ecosystem & Geography

Associated Families

Sequences