Scaffold Ga0210406

Basic Information
Taxon OID	3300021168 Open in IMG/M
Scaffold ID	Ga0210406_10001053 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	35194
Total Scaffold Genes	40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	34 (85.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

35194

Total Scaffold Genes

40 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

34 (85.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000313	Metagenome / Metatranscriptome	1323	Y
F052758	Metagenome / Metatranscriptome	142	Y
F064931	Metagenome / Metatranscriptome	128	Y
F090711	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210406_100010532	F064931	GGAGG	MEGELPYKTAFCTEYERLLCVCVQSLDTWKNRREEIANSVLREWEVSDELMRLQADYAKAYSHLEKHIDNCKLCHFVSKISGRNNASVSTAVMDKKHSA
Ga0210406_1000105321	F052758	GAGG	VEQRKQGRGRHQHFIGSWARLNCENMPVIPAWLVRSNLNDPRRIPYLLIWKYERDGKIMEAVRLSHFIACGKEGNHYVELKRTDGTATALRIVWRTLPRNGGRALFLFCPHCETPRRHVYGWEWDSVSGWSNRVRSINWRCRSCARLRYSSEGGYLRPTGLGRLGQLGVRLRAFGNLPRPESWLPYVFTSPKEAAEVGNCELSSVSWYGKR
Ga0210406_1000105339	F090711	GGAG	LKPMFDTVAGKFEKGPYFPKDESRNSWEKRTREYYDTKLGSQQTSTVHTFNRPEARVAIYGDGAILQVEASLPKLLYGNNLATVCDAELPLNRLHEFVSDHVNGEIPDLSGMDYLRVDYCHNFRVGPSLADYVSTLGGLSFLTHRRTTDGYGGVEWWSNNGRRIRAYNKYNEILANDKKKIAKALGVLRFEIQLRKKSGYLQRRQGKKKLTLQDVLQPEIAYCCLVEILDKMSLSTEFLARDAARSVLDANFGFQKATRLLGFLRRLETETMEDLKRAIARSSYYKDKGELSRLGLWPPSAGPVSLPALAMPPLEELLSDSSILPEKAA
Ga0210406_100010535	F000313	N/A	MPKIIERWLLFKYVKGQFTPLSKPFKTKAAAGKARLKLPERERRGVAVGVIRSNP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210406_10001053

Overview

Ecosystem & Geography

Associated Families

Sequences