Scaffold Ga0210406_10000010

Overview

Basic Information

• Taxon OID: 3300021168
• Scaffold ID: Ga0210406_10000010
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 320614
• Total Scaffold Genes: 301
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 225 (74.75%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000072	Metagenome / Metatranscriptome	2651	Y
F000231	Metagenome / Metatranscriptome	1516	Y
F000249	Metagenome / Metatranscriptome	1459	Y
F000391	Metagenome / Metatranscriptome	1196	Y
F003119	Metagenome / Metatranscriptome	506	Y
F011862	Metagenome / Metatranscriptome	286	Y
F062017	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210406_10000010228	F011862	AGGAGG	MRARNGTAMLFALAAFVWSAAAAESRPSDRTVSSLTHNTTIHIITQIQRADYEGDRAALKRLHDELAPIPTDNKLASRVLYWRGFAMWRRAINGFNETPTPTDLEKDLTQAIVDFKDSIDRDPAFVEPKIGAGSSLGYLVYLHRKDQARVQELLQQSSPLLKEALAAAPDNPRLLWVLGPIRWSSPPERGGGQEKAFDLYNEGLDAIHKQKPSSDPLEPAWGEPELLMNLAWSNLNRTAPDLKAAEGYAQSALKLIPYWHYVRDILMPQIRAAQAKIH
Ga0210406_10000010240	F062017	N/A	MKRQVMLYIFQATALFWAFAVCLRTVDLGWNPFAGIGLGMFGALPISFLGIRIHSKHGQAQEQVPAS
Ga0210406_1000001029	F000249	GGAGG	MKRLLLCLIMGLIFAGTLRAQDQDQVGDLVLRDSDKFFLPKDTFWGYAQFDLAPPHNEIDPNLCTGNAGTFGGVNAPCSLFARYMLSGLLEVRPFGKGQLRRFMVWGQPSFLFGKNIPQTSYTWSFDAIGIEHSWGAAVYIAKGFDIRFTQHFLFDRLGARDTHLGPADLGNNGPWGRYNAIGVRKTFGTRRW
Ga0210406_10000010298	F000231	AGGCGG	MESLERCAGPNCGQIRQMNDRWWLMWTSFGEFNRPVLYLAPWDEDIAKREGTLHVCGELCAQRLQSHFMGNVRSNEITRRIAS
Ga0210406_1000001056	F003119	AGGGGG	MKDIHEVLRRKQAKFAQLGKQIEMLQQAAEKLREVAPLLAENDEDDSAVLSEMDEQPQAKAAAAGAGSTTGKPRGSSPRWP
Ga0210406_1000001069	F000391	AGGCGG	MSPETLQAESPYCVRIETETGQSSTVPIAVLTPKQLEVFLQSEFKRLVQEAGVKGARIHVERATVADYEHVLREVAACLFSAKARAA
Ga0210406_1000001070	F000072	N/A	MDAEKTIAEIELLERIFAVPDTRPLSSSDLWAVNRRHDEMLAHNPWFQLWQRYGVCCR