Scaffold Ga0179584_1001914

Overview

Basic Information

• Taxon OID: 3300021151
• Scaffold ID: Ga0179584_1001914
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_06_16RNAfungal (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1105
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006433	Metagenome / Metatranscriptome	373	Y
F007657	Metagenome / Metatranscriptome	347	Y
F061592	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0179584_10019141	F006433	N/A	MADTSYRIVHREDDSFAVEIVRVGALPQTAAGFATEAAAKGWIAQDERLRSAADPFGTPAGRRRGY
Ga0179584_10019142	F007657	N/A	VSWVTFEAATGGLVTVQLRHVVAIYDEQGSVKLATTSGGVHILKDITVQRAAGIVSNAEDATAIRPEQ
Ga0179584_10019143	F061592	AGAAGG	MSMTPDEPTENEHVQADDAADAMKDQLRKDVASWREGRSEGSSRGATELSVAVARSIVPPTTARMKRAKPAAPEVKSASTEKKPFGMSYDGTSRADYIKLMISRGAR