NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214192_1032252

Scaffold Ga0214192_1032252


Overview

Basic Information
Taxon OID3300021142 Open in IMG/M
Scaffold IDGa0214192_1032252 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 29JUL2008 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1751
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047014Metagenome / Metatranscriptome150Y
F057882Metagenome / Metatranscriptome135N
F073069Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0214192_10322522F073069N/AMTSKDTVLAKKEVGIKEIIENIKKRPNLPYGERKTEITKSLFVERTNKEVKQLKFKTALYLTELERGDEEVKEISNYIITHYLDEKSNTTSKDSEIKNINIFQEKLKKITNSITKITKEKVEVANKQLNKDMSKETRSILKENFILMYEINIRLVDLKLMYEYIITKMISAEITEGMLTEARRRKWTRFY
Ga0214192_10322523F047014N/AMSSQVNKARDQWIRYLINFTEAWGKIIEAKKGKEAEHYCARIVNIIQKLRKLDQQWYLENSVPERNLIPIQHSSQGSYHILQGA
Ga0214192_10322524F057882GGAMSCGNNLKEFDHPEYGILDPSQVRELRDELTRCFVDYIGGLSKHLREREAVDIEEDRVTKSHYLKVCATIQNLNKIDPGWCLRYFAPDDECLKIKLHDCRCCYHTCQELSRVIQSPKSN

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