Scaffold Ga0214192_1017816

Overview

Basic Information

• Taxon OID: 3300021142
• Scaffold ID: Ga0214192_1017816
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 29JUL2008 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2620
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009462	Metagenome / Metatranscriptome	317	Y
F026556	Metagenome / Metatranscriptome	197	Y
F063276	Metagenome	129	Y
F070810	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214192_10178162	F063276	AGGA	MPDSSFRQNLDFFMVMLLGLAGLVFAVYWNYTHPHVVVKYDCSIAEISPDYPIPVKEACRQLRANKI
Ga0214192_10178163	F070810	GGA	METVNKVYEIRIPWDNQKEYWWNELCADIVEVFGLPGDRYTSHPFSDYMLFYFKSKKDFHLCQILVSDKI
Ga0214192_10178165	F026556	GGAGG	MTSALIKLMFGIALILLALVFGPIVGIWSLNTLFPTLAIPYTWQTWLAFNCLFGGSIATRLKR
Ga0214192_10178167	F009462	AGGAG	MELHESVRDTYTEQVIKEHEGFRLVLKKHEVLNPKGLFSVDMEQQSLKDGVVQDTAVYNFFMTKDEMATLASALTA