Scaffold Ga0214192_1008429

Overview

Basic Information

• Taxon OID: 3300021142
• Scaffold ID: Ga0214192_1008429
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 29JUL2008 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4363
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060487	Metagenome	132	N
F070722	Metagenome	122	N
F071820	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214192_10084292	F071820	N/A	MSQQRLKATSWASLLQNEIKATEKKPVGKGWKTAKELQREFKVGERKLYEILAKLSREKRIERFSGFIINDSGQKATRAWYRVKRTAV
Ga0214192_10084293	F060487	N/A	MAWLRLTTMKNKRTPSKVSQVKELQAQIKHLQMIVASRELDVEILEEQINRIEHNKLWNRIKRLFSLRDTTL
Ga0214192_10084296	F070722	N/A	MNDELLKQALAQIGRKGGLSTSDRKRASSRLNAAKATEARLKRQKPVKGHRIGSNEHIMD