Scaffold Ga0214163_1018800

Overview

Basic Information

• Taxon OID: 3300021141
• Scaffold ID: Ga0214163_1018800
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2114
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011064	Metagenome / Metatranscriptome	295	N
F017099	Metagenome / Metatranscriptome	242	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214163_10188001	F011064	N/A	MTGESVLDYFWQEFAAIEWATDMTLGDMFDVSLWTHKLCGSLCDLLLASQSSRPSQYDLNTVAANVLGYVFNIYRCKMGQLSINLEIDQHWVNYETQRDTEILKHIKKLQEILIANKIILNEGSNQPQQPYALSRYRADVQSDQDLGYELSCILQFIAIKTQLTLRQLAFLRLKIINPTLYERQRVEKIGLFKPADSSASSSETEL
Ga0214163_10188002	F017099	GAG	MLKSINCYFIFQNMEFIEHISVGFWKKFDSILQTKETTRNELFYALATLQHDILQCYRKIIDHVDNPSQVLDLRDETSALLSQIIRCHRAKGVHFQLYYDTPKPWSKPSHKKLIDFSMALSLIQMSHRRIDNEPGNEFVASQIVDDNFVRLLSEILRFMLAWTVPLTLREIALYKYFKLDPVGYEHDKNLKTGLFDSPPLVDSIENRVSIRMEELMKQGEEVLVSTPKPEDPNRAQTLVEERKKLESLSNWFVWE