Scaffold Ga0214163_1018200

Overview

Basic Information

• Taxon OID: 3300021141
• Scaffold ID: Ga0214163_1018200
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2158
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000450	Metagenome / Metatranscriptome	1126	Y
F000980	Metagenome / Metatranscriptome	814	Y
F006984	Metagenome / Metatranscriptome	360	Y
F007470	Metagenome / Metatranscriptome	350	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214163_10182001	F006984	AGGA	MPNWCYNTLTIQGPKSEVDMIKDRLNAPFTLAQETFGMGDISTMGFPTKIEQVTYSNPVFAFFNIHSY
Ga0214163_10182002	F000450	GGCGG	MGDRANFGFVQPNGNTIVLYGHWAGHNMLANLAEAVFKARPRWNDPSYATRITISNMIADQWNMETGWGLHVNEIGDNEHKIAIVDFEQQTFSLHEEAPRNDLDNKVNGMSNDAIFTMDLSNFVEKYADVVVPV
Ga0214163_10182004	F007470	GGAG	MDYQDGFEDGVKFAREVIVNNIRLWAETSDDGSAYDDIADRLEFGTVDYDL
Ga0214163_10182006	F000980	N/A	WVCTSDCDALIEYTFKDGYGWPNGVMDLTCRCGTACTLLSVEDATIPYTDTPIETKEEKMETTENVVPDTYNPNLLVTYKVIRGYSDAEYATDKVTSIEWDLHNARQAQKTNGVLNGKIDAVKEIICEAYADSQDQDTLREIAEALSIELIKEVEWTASIEVSGTYSYNILENDYDLDLESEITDAIFAESNNGNIEIGDQEVCNVREA