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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021141 Open in IMG/M |
| Scaffold ID | Ga0214163_1010095 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3163 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, WI | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002398 | Metagenome / Metatranscriptome | 563 | Y |
| F002406 | Metagenome | 562 | Y |
| F009266 | Metagenome / Metatranscriptome | 320 | Y |
| F033420 | Metagenome / Metatranscriptome | 177 | Y |
| F099190 | Metagenome | 103 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214163_10100951 | F002406 | GGA | MSDRLRDELSSEYDDDTKDLIIRAFMRGLYQDPSIVEELKSSSLIESDYFEDDKE |
| Ga0214163_10100953 | F002398 | AGG | MMLPLLHIFLLTSVDPIKNFVSLKTYISENAKAHCYVYFINEDIPDYPRVNIIEKSKFDFFAYLDTIGIEHTQVGSYYFFNRKPK |
| Ga0214163_10100954 | F009266 | AGGA | MTDKERKILDKEIQYLCEQQDRVKAIREYTGINPGYTFLREVETIESLYKSVLESRKYDKSTYFSAATSGWYVVYLRDKKTYKKDEKFKIKIFHTFVWTDNLD |
| Ga0214163_10100955 | F099190 | N/A | MEAKTISLTYHITERHGYIEVPLSLLRKLKISKLISEYSKTLRRTVFVEEDGDATLLTKRLKLEGYEVILKESERRKQDFFDCLPKFNDAHCRDKQFSGFTSDYEFKINHIVTLPEKYKVNENVLSAPDEDDITIEVTFSRNGQKLKEQALQRLGIKPSLFFQCESERYYED |
| Ga0214163_10100958 | F033420 | AGGA | MSDTPKSFLELDDAPVKIQPNASVFTSVASLQVAEGSTAKQDSNGNWFNAIGLQSTSTHRHVAKVWQDKCTPFSDFVSSVKSQVEFKEDIVKKESEIRLKDANTLVDGTPLTKSGMNSLRMFTDIPSSMVSFLSE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |