Scaffold Ga0214163_1008519

Overview

Basic Information

• Taxon OID: 3300021141
• Scaffold ID: Ga0214163_1008519
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3518
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006139	Metagenome / Metatranscriptome	380	Y
F053986	Metagenome	140	Y
F062567	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214163_10085193	F062567	N/A	MKENPDMSEQLEMFTSTIGLGGHKTKVALDHPSVAVRHDAVDTSRQAAEMAKPHAGEQRKKIHFWIKWASKLESKGMTADEISMLLELPAQSVSARINGLHKDGWIVDTGLRRNTRYGRKAIVWAHNFDLKEG
Ga0214163_10085194	F053986	GGAG	MSEGVAWNQGELSEETRKMIMDSNPMMKHQMAVFSLLEDIARPNHAARKFRDDHLIRGLRNMLIDFQLSGQDDYAETAILAIEALGGQVKPDK
Ga0214163_10085198	F006139	N/A	MGTEIVVSLIGGGFLVLVALIGKIGSDNKKDHGQVHSTLGRIEQKIDGHIEGHK