Scaffold Ga0214163_1008012

Overview

Basic Information

• Taxon OID: 3300021141
• Scaffold ID: Ga0214163_1008012
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3657
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F002060	Metagenome / Metatranscriptome	597	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214163_10080125	F000473	GAGG	MFIDKSADKQREHFKYGINHWTGEPNKPVFYTEEMKKKVHQIKKPSLLLMDVVMYPDFLALRLYEDNFLQFEGIKKEMVIDYVKKVKKLIESYGVRCEMEGKPSERVL
Ga0214163_10080127	F000671	GAGG	MEKILCYSCNKSKNKLDIKKSTLMPINLFMCESCSSAKLEPRWVIILAGRANGSDHVKEFVIKRRYLGNEISASELLV
Ga0214163_10080128	F002060	N/A	MEINYISVIIAISAAMVSGMGTAIIAGLRDGKKEKRRQIEREQDHLKLEVKDLKIALYKIERELTEWKDKYYDAIQELISVKSELEETLLKLSFMDHKIDDLDGVLDREF