Scaffold Ga0214163

Basic Information
Taxon OID	3300021141 Open in IMG/M
Scaffold ID	Ga0214163_1005183 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021141 Open in IMG/M

Scaffold ID

Ga0214163_1005183 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4793
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4793

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, WI
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, WI

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001229	Metagenome / Metatranscriptome	741	Y
F001900	Metagenome / Metatranscriptome	620	Y
F005054	Metagenome / Metatranscriptome	413	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214163_10051833	F005054	AGG	MAEVLINSQSPITHKVFWNGDVANADALPTVGLYDVTLDPNISPAINPTQLLTTLTSSLDENNPGTYVVNVPYQYTNRNRTLRLDWNYAVGGTSVKKTDEIFVVTPYVDFNHVADMEFSTDSSDPGYKSYKDLILAEKYARKVIEQHTGQNFYLKDEIFVVYGHDSDILPLPSRVAEIYYLYARDILLLDNIEEINNWNYDVIVSESAYGIRINRASMLDNTVYTANGMVPPSINDYGNGVFQSGVPYRVYGRFGWEKVPDDVELAAIELMKDYFAKDTVWRNKYIKKISTFDWDFEYTGEAHTGTGNAYADKLLADYVLTTKVEII
Ga0214163_10051834	F001229	AGG	MNDLIDSVLSMHLDVYKQSEVQDPDTGAIIREWSYYKTVSCHAKGVISNSATTRSSDKQIFSNKYLNDQIIQVRTSERLTPREKVTNIRDNAGNVIWHEINFPSETPTVFEVMGTTPVTDPFGKVIAYNSSMKRSENQQIGQ
Ga0214163_10051835	F001900	GGA	MLVQASSGLERLMGGSGPGGVLKDSTVAQVSAYVYYQANVIAKLTSSKQFQNTFTKTIFDQIEQDFGAYIDSLARSKPKSLHHVYEWKKTGTPSSRLFKLNKVSQQGLSFKVNYEFKMSRSMVPAPKGKRRHMFANKAFVMEQGLPLVIRPKNAERLVFESNGETVFMPKGASVTVKRPGGSAATNQFGLAYSRFFSGQLVNSSIKNSGFQRIFNSGLTKAMKLPVNIKKVQYKFSPNTVRSQADAALAVAFGSAL
Ga0214163_10051836	F000258	GGA	MTANYKLDAMLELRKFLWQELYTREIFDKDDYWSDNLNENIVPIIPVQQSAEMNQFLSGKKHIVYDKIGMSYDDNWLICCEQVMFTLYSTSVAEINEIRNYMTDQFRRMDESARDINRWADLSDKFKFHSVYVADISPIAPSEELQGFFSAEVILEIKYSRITDSQGRFL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214163_1005183

Overview

Ecosystem & Geography

Associated Families

Sequences