Scaffold Ga0214163_1004403

Overview

Basic Information

• Taxon OID: 3300021141
• Scaffold ID: Ga0214163_1004403
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5294
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004050	Metagenome / Metatranscriptome	455	Y
F005323	Metagenome / Metatranscriptome	404	N
F007223	Metagenome	355	Y
F031078	Metagenome / Metatranscriptome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214163_100440311	F004050	GAG	MAKKKVIDLDTYNALDAYAISMHEFYKSLRRAGFAVDLCLAIIVDKDAYPDWILPSIPDRVDRLPYEDDDED
Ga0214163_100440312	F031078	AGGAGG	MEAIIYATIGLIAIPVLRTAIKSYRAKKAIADIVVDSIEAAVDTVEKKK
Ga0214163_10044035	F005323	GAG	MAAPEGEIIMGSLQFMNQDGEWESFPTDDEIARSKEVQAILEEFTMMTRCCLCNESIPVSEIKVNLQSKAWSCRKCHAVNGLTKP
Ga0214163_10044038	F007223	AGG	MFDTIIQDVIALLAISALWFHLGRIVGIRVGYLKGRKAVRAYYASKERVKV