Scaffold Ga0214163_1004398

Overview

Basic Information

• Taxon OID: 3300021141
• Scaffold ID: Ga0214163_1004398
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5296
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008552	Metagenome	331	Y
F023349	Metagenome	210	N
F039635	Metagenome / Metatranscriptome	163	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214163_10043981	F023349	N/A	MKHVLYEVADNWDIIIKLTFENYTYLNAFIEQHTADKKYEPKFLVLEVNDEGDIDFLRIYNGVKETSKKYVVDFVD
Ga0214163_100439812	F008552	N/A	VKLFAKRYTITVMIISFEASANVDTTLFGYFSMEYDPELFSDIKENLTEISKNEPLSFKLDTNDVKLLQGAFHNIRRIICIPDVEQNKFTDVLKREFDTSTFKKFKQCKLHIDKDYFYFTGNYETGNNPIEFQSLNFDTRFIESLEYKYKKHQESVVN
Ga0214163_10043987	F039635	AGTAG	MTQEQANKIKSKVEAFNELYAPITLRFQMFSTSETNWAVSITYNYTPEEWMTFASLDSSYNQINDKLSGFQFGLEAVEAFQEENGNLKFSHSDVPLG