Scaffold Ga0214163

Basic Information
Taxon OID	3300021141 Open in IMG/M
Scaffold ID	Ga0214163_1003956 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021141 Open in IMG/M

Scaffold ID

Ga0214163_1003956 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5673
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (13.33%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

5673

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (13.33%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, WI
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, WI

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017129	Metagenome / Metatranscriptome	242	Y
F037728	Metagenome	167	Y
F042337	Metagenome	158	Y
F062757	Metagenome	130	N
F087181	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214163_10039561	F087181	N/A	MSFGEIVFAMVMSGIVGLWVYAYIVSDEVGIILWDNTMLGWGWKKLFGEKKKAKQAPIPSFGHIPPPPAMPTAFNTSSLNVPHMNHIGKPLVIKNWDRLAGMATMVFGRRWIVVQAFYASSYEFTLQTGGMAKSVTFSIYGDMYDSHRVSVYCQGRTEIMDVGICKDPNRLLHEVTYTFNEKFR
Ga0214163_100395611	F042337	AGG	MELVIDGITKLIWHTYDGRKISDIRIDKRNGARAASYVFTFPSIDGTLEGWNRELEVYLCKFPDGSGRYELFVMGLHGVTCHYLERDEIKDINSFHNCMISTMFKAKQYWLSV
Ga0214163_100395612	F017129	N/A	MNTTYYNYNDVQAYEALESERATIELDPSYQQWVAELNVSRSYVDPEGAIKAKYLTDQYSFSTSEPKSSFLNFLKLKGIWS
Ga0214163_100395614	F037728	N/A	MKRLEITNFTKRVMEIHSDYFEVKYCTDTGDKYIMGLDTNDVVSFKPLDSGKHYKMSIDKRPNEDGNYGIWLWDMNGNISYPMSISMDSLKSLSLFTSYLIHTLRLANEGVFKGDKGNRI
Ga0214163_10039567	F062757	N/A	MLHIQNIRKLGGRRLFGGWIITAVGGNPNEPQYILDINCNGPIGNRIDRCTISLNRIGIVQRTMGRPVELAYFFYYNGERTDVCVTKDWILNPENFISQLKYIIKEYHNKG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214163_1003956

Overview

Ecosystem & Geography

Associated Families

Sequences