NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214163_1002945

Scaffold Ga0214163_1002945


Overview

Basic Information
Taxon OID3300021141 Open in IMG/M
Scaffold IDGa0214163_1002945 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6774
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Loigolactobacillus → Loigolactobacillus coryniformis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, WI
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F087202Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0214163_10029452F087202AGGMNIRNFLVLANKLDKKGNYKTSDKIFKFVEAQTDNLDEDPLGISDIQPTRMKDDPIVDKLRKMVAGGEISEVQFWAALEKYKPGTFQNMLSNVGRAGEGDVDKIERNIASQGIRVDPKERDILAQFYEISNDVFNDFITSLQADFASTLRTMARRNELPEMFSEINEHRAGNLIMELIEPSTKEEFLTREYLELTAHGIGLSNAVQIGTDGDFSDINEYLKSFVKDQAPSIAGQASRATGLQYHPEDIERKVQDVTIDTLNETIDNSLTELYYVYKG

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