Scaffold Ga0214163_1001845

Overview

Basic Information

• Taxon OID: 3300021141
• Scaffold ID: Ga0214163_1001845
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8915
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001298	Metagenome / Metatranscriptome	727	Y
F015971	Metagenome / Metatranscriptome	250	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214163_100184512	F015971	N/A	MGTKSIRHICESTLATYLSTQTGLTTVTFLTGDSAATQTLPKAVVLCESARSPADLPEGEGNFSCSVRITLFSNADDTTL
Ga0214163_10018459	F001298	GAGG	MGAFFVPPTNPGKYRMSLYGTEFLNDAKEMVADFGVAGSANSGAITFSCLISDPAVSTVLEAGGYMERTQYTVRLPAVTASWSQPDGSMGASAALLSAGAPIASLAQGKKIVAGGKTVRITTQTYKPGSAWITLVVIDDNQ