Scaffold Ga0214163

Basic Information
Taxon OID	3300021141 Open in IMG/M
Scaffold ID	Ga0214163_1001186 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021141 Open in IMG/M

Scaffold ID

Ga0214163_1001186 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11521
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (16.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

11521

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (16.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, WI
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, WI

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003904	Metagenome / Metatranscriptome	462	Y
F008356	Metagenome / Metatranscriptome	334	Y
F011485	Metagenome / Metatranscriptome	290	N
F014128	Metagenome / Metatranscriptome	265	Y
F016799	Metagenome / Metatranscriptome	244	Y
F025688	Metagenome / Metatranscriptome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214163_100118612	F008356	N/A	MNASEFERNKPVKTFRKIKALEKLIQEEQIKTENLYANRIATLDTMLKSVHDLMESFKKG
Ga0214163_100118614	F011485	N/A	MIKSFKLFIVSVLASVAVFAADAEESTINASINAGYNNHYIVNGLAKTGGSAFAGFDIGKTYFGVDAYVGGVVLPNSNNIDESHWKVGVGKALKITEKFSLRGDLQVLRHQSSILGGRNSTEIAPKIALVNPYLTPYIRGSHDFNLGQSGYIVGVERPTDVFGWFTVTPAVEYGKFTDYDVVAAKIGVSRTFFNHLQPYAEVGYYDNNFQSSKYNFARQEFSGDVVAIAGVRWNF
Ga0214163_100118616	F016799	N/A	MKMAPLIRQYHPSIVDTNLDIYKVKDRVMAAPISPTPDPFQVTDILGSNRINETKIKIVVYNSKGLFYFI
Ga0214163_100118618	F014128	N/A	MEYLQKMGIQIGFLISGLFGAILMATKNEKTDIKSVFLSLIGGISAANFLTPVLVDTLNITNIKHQNGIAFIAGFLGLKLVEIVSEKFLEKISNKTKPKKTTKRKKR
Ga0214163_100118619	F003904	AGCAG	MNNIILNIKKYLFFALLPTVILVILSISSLKDIEQGYARFRLGRDITLYLRKSTDLLTYLGVAYTTTSDKKFLDQFNNHLKEREKYFNEEIFISKILTQEELKEFRKGLDISSDLAKDVENPAFEKMDNKTFFSDKYLDYKRRIIENNQNFRTLINDSSEKIIKDEIVKLNIYLYILCLIIILLVYLIKCDNQPIKKKTIKKKKK
Ga0214163_10011864	F025688	N/A	MKFILNIDGSNAGGKFLENYVGQEVNIDSLYKDIDINSPPLAILKTEDGKQHSVQLIDVRFINEFIFIQCFAIQHDDKQGGKALLRLKPVCGLEKVINP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214163_1001186

Overview

Ecosystem & Geography

Associated Families

Sequences