Scaffold Ga0214163_1000475

Overview

Basic Information

• Taxon OID: 3300021141
• Scaffold ID: Ga0214163_1000475
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18678
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (95.24%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031484	Metagenome / Metatranscriptome	182	Y
F055298	Metagenome / Metatranscriptome	139	Y
F068601	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214163_100047520	F068601	GGGGG	VRTDKPLSNLVKLSDIRRERELALSPYGPVRAGLTTSQRTSEEVRLMELLNSLESVVETLNFKSFTVYDTLNTAIEGVRAALCGITPEAGTDD
Ga0214163_100047527	F055298	AGGAG	MSNSNPLVDHLAVVGYRAGGVSTEDLTSFIESFASLRANRVKGVGHDQYSHAQGQKFESFTTSDTIKELIEELADASNYIDFLAIKLLNIQHTIDLVLPDCD
Ga0214163_100047540	F031484	AGGAG	MNTTKLIAIATTYARAAVPAVVALYAAGVTDPKTLAYAFASAFIAPIWKSLDPKAKEFGRGAK