Scaffold Ga0214168_1019587

Overview

Basic Information

• Taxon OID: 3300021140
• Scaffold ID: Ga0214168_1019587
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 29OCT2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1902
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030090	Metagenome	186	Y
F072276	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214168_10195872	F072276	N/A	MASTLIEASTKKRFSSLFTVLEDYRPTEERVLVFKDREDSPNFLVLKYVRDDDGKIVQRGTLEEVNEEEFKREHAPHADWDKTTLSEYDQKFQDWRSSTLMQKLEQVGDDEV
Ga0214168_10195876	F030090	N/A	MEDPRATQLKTQYNQVVMSVARNTYLKAQELIRDLNEAKIRDEDKNEIRLHLIKMVTTKPTEVK