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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021140 Open in IMG/M |
| Scaffold ID | Ga0214168_1008669 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - Practice 29OCT2010 epilimnion |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3308 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (20.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, WI | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002092 | Metagenome / Metatranscriptome | 594 | Y |
| F010320 | Metagenome / Metatranscriptome | 305 | Y |
| F018537 | Metagenome | 234 | Y |
| F018924 | Metagenome | 232 | N |
| F059953 | Metagenome / Metatranscriptome | 133 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214168_10086692 | F010320 | N/A | MNYYQLIAFAQQLKKENMKINNDAFINDAYNEESKLYGEFMDEVKLHDYSYMMSDDHNVYMNGRNHEKQIEEKLHALINICRYDGHDLLDEVISAVPQRYNDVDVHGNDLTHRVIRGWFKPYVFDNFEL |
| Ga0214168_10086694 | F059953 | N/A | MNLELTLMELNDLYYVVSKGVESHKELVEIAKRTTPELEKYFEKELSKSVQLLDKIQTVLYNEYQVMDDEPEYDSAGFTEDDRMQEVKSEKKLFTLNNDR |
| Ga0214168_10086695 | F002092 | N/A | MRTTNQKAMEYLKGNPIVANFINKLNIQRKDHYVKADMVSQYKELVVEVGQKYIRLWQGTSCWGFISRVDGDLKGSPIKKGDLLKAATWKAPAKHARGNIIDGTARYSTYGPEYL |
| Ga0214168_10086697 | F018537 | N/A | MASNRTSNYIATIPMKNEEQVLEVKKVLEQIFGWVTLRGRHSDRKSVVKSWGRSRQNDVPWRVAQYIDIYLHAANPNRMRISQKKGMERKNLSLSDNNVIIARTLGSMGYSLADGVKHTQQSHSSSPLMAIMKLQYQTQMKDPKFQRKEMKRKYMNKSYKLQKGDWGYIAQELLDYTYLCNKVSFSQLKSHYDIVMRGNATIQKGGSFIHHLHSLIDARNAIGRRCGRYLYKDTDGKYKVSNI |
| Ga0214168_10086698 | F018924 | N/A | MENIKLVTYKLKQMTNSEKAIAQLFGVLCSIVKSEHTPQATKQATISTFQHLIGEEGSPFLNDELIQLSTAMDVEMQSIVRQLNGDRILNNVLTNNINLN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |