Scaffold Ga0214168_1006750

Overview

Basic Information

• Taxon OID: 3300021140
• Scaffold ID: Ga0214168_1006750
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 29OCT2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3876
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015732	Metagenome / Metatranscriptome	252	N
F048314	Metagenome / Metatranscriptome	148	Y
F074411	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214168_10067503	F074411	AGGA	MQISIKLTEKQVALLLQILDEQISIGNIEASDKALASEVLEILETAENKITSLY
Ga0214168_10067507	F015732	AGGA	MTKITNLETAVGIVRNTPDKAIALSEIMNILGVSRSNAFVYHTKASKILFSANNVDEIMGKVSPQYKKVTDTVQGTSATKKAAKLAEIDAFLANAPTAKGNPFASLGA
Ga0214168_10067509	F048314	N/A	MKATIENAAEMLSMGYSEHEIVRILHIPPSMAEELIQKAEQWNDTTFVPYTDSDIDDMADYFGA